Long story short since this can't be long, I got sprayed by a skunk...I called the doctor and he said since I'm allergic to all the ingredients including tomato juice I'll have to let it fade on its own, so how long will I stink for?

Oh, that will take a while, that's for sure. Take a lot of baths and showers and it will go away in time. You might keep an eye out on this site for a user named : Skunky Stinkerson as it was probably one of his relatives and he may have some tips for you. Or you could try this :

Skunk Smell Remover Recipe

1 quart hydrogen peroxide
1/4 cup baking soda
1 tsp. Dish detergent